Kai-Yao Huang, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee, 2016, "dbPTM 2016: ten-year anniversary of a resource of post-translational modification of proteins" Nucleic Acids Research 2016 Jan. 4, Vol. 44(D1):D435-D446. (SCI, IF:10.162; 14/289 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

Shun-Long Weng†, Kai-Yao Huang† († joint first authorship), Julia Tzu-Ya Weng, Fang-Yu Hung, Tzu-Hao Chang and Tzong-Yi Lee*, 2017, “Genome-wide discovery of viral microRNAs based on phylogenetic analysis and structural evolution of various human papillomavirus subtypes” Briefings in Bioinformatics (accepted), (SCI, IF:9.617; 2/56 in MATHEMATICAL & COMPUTATIONAL BIOLOGY)

Hui-Ju Kao†, Chien-Hsun Huang† († joint first authorship), Neil Arvin Bretaña, Cheng-Tsung Lu, Kai-Yao Huang, Shun-Long Weng*, and Tzong-Yi Lee*, 2015, "A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs," BMC Bioinformatics, Vol. 16, Suppl 18, S10. (SCI, 2014 IF:2.576; 11/57 in MATHEMATICAL & COMPUTATIONAL BIOLOGY)

Kai-Yao Huang, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee*, 2016, "dbPTM 2016: ten-year anniversary of a resource of post-translational modification of proteins" Nucleic Acids Research 2016 Jan. 4, Vol. 44(D1):D435-D446. (SCI, 2015 IF:9.202; 18/289 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

Cheng-Tsung Lu†, Tzong-Yi Lee† († joint first authorship), Yu-Ju Chen, and Yi-Ju Chen*, 2014, "An intelligent system for identifying acetylated lysine on histones and non-histone proteins," Journal of Biomedicine and Biotechnology, Vol. 2014, Article ID 528650, 11 pages. (SCI, 2013 IF:2.706; 53/165 in BIOTECHNOLOGY & APPLIED MICROBIOLOGY)

Cheng-Tsung Lu, Kai-Yao Huang, Min-Gang Su, Tzong-Yi Lee*, Neil Arvin Bretaña, Wen-Chi Chang, Yi-Ju Chen, Yu-Ju Chen and Hsien-Da Huang*, 2013, "dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications," Nucleic Acids Research, 41 (D1):D295-305. (SCI, 2012 IF:8.278; 27/290 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

Min-Gang Su, Chien-Hsun Huang, Tzong-Yi Lee, Yu-Ju Chen and Hsin-Yi Wu*, 2014, Incorporating amino acids composition and functional domains for identifying bacterial toxin proteins," Journal of Biomedicine and Biotechnology, Vol. 2014, Article ID 972692, 7 pages. (SCI, 2013 IF:2.706; 53/165 in BIOTECHNOLOGY & APPLIED MICROBIOLOGY)

Min-Gang Su, Kai-Yao Huang, Cheng-Tsung Lu, Hui-Ju Kao, Ya-Han Chang and Tzong-Yi Lee*, 2014, "topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins," Nucleic Acids Research, Vol. 42 (D1): D537-D545. (SCI, 2013 IF:8.808; 22/291 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

Kuei-Fang Lee, Julia Tzu-Ya Weng, Paul Wei-Che Hsu, Yu-Hsiang Chi, Ching-Kai Chen, Ingrid Y Liu, Yi-Cheng Chen, Lawrence Shih-Hsin Wu (2014, Sep). Gene Expression profiling of biological pathway alterations by radiation exposure. BioMed Research International , Article ID 834087. (SCI).

Kai-Yao Huang, Min-Gang Su, Hui-Ju Kao, Yun-Chung Hsieh, Jhih-Hua Jhong, Kuang-Hao Cheng, Hsien-Da Huang, Tzong-Yi Lee*, 2016, "dbPTM 2016: ten-year anniversary of a resource of post-translational modification of proteins" Nucleic Acids Research 2016 Jan. 4, Vol. 44(D1):D435-D446. (SCI, 2015 IF:9.202; 18/289 in BIOCHEMISTRY & MOLECULAR BIOLOGY)

Chien-Hsun Huang, Min-Gang Su, Hui-Ju Kao, Jhih-Hua Jhong, Shun-Long Weng and Tzong-Yi Lee*, 2016, "Incorporating two-layered machine learning method with substrate motifs to predict ubiquitin-conjugation site on lysines," BMC Systems Biology, Vol. 10 (Suppl 1):6. (SCI, 2015 IF:2.213; 11/56 in MATHEMATICAL & COMPUTATIONAL BIOLOGY)