Integrative System Biology Laboratory

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Publications »  2018

• MicroRNA-224 down-regulates Glycine N-methyltransferase gene expression in Hepatocellular Carcinoma.

  J.H. Hung, C.H. Li, C.H. Yeh, P.C. Huang, C.C. Fang, Y.F. Chen, K.J. Lee, C.H. Chou, H.Y. Cheng,H.D. Huang, M. Chen, T.F. Tsai, A.M. Lin, C.H. Yen, A.P. Tsou, Y.C. Tyan, Y.A. Chen
  Sci Rep. 2018 Aug 16;8(1):12284. doi: 10.1038/s41598-018-30682-5.  

• Large-Scale Functional Analysis of CRP-Mediated Feed-Forward Loops

  C.D. Yang, H.Y. Huang, S. Shrestha, Y.H. Chen, H.D. Huang, C.P. Tseng
  Int J Mol Sci. 2018 Aug 9;19(8). pii: E2335. doi: 10.3390/ijms19082335.  

• Mitral valve repair versus replacement in patients with ischemic mitral regurgitation.

  M.L. Lee, T.H. Chen, H.D. Huang, S.M. Hou
  J Thorac Dis. 2018 May;10(5):2820-2828. doi: 10.21037/jtd.2018.04.93.  

• Extension of C. elegans lifespan using the ·NO-delivery dinitrosyl iron complexes.

  W.H. Huang, Y.H. Lin, M.H. Lin, Y.R. Huang, C.H. Chou, H.C. Hong, M.R. Wang, Y.T. Tseng, P.C. Liao, M.C. Chung, Y.J. Ma, S.C. Wu, Y.J. Chuang, H.D. Wang, Y.M. Wang, H.D. Huang, T.T. Lu, W.F. Liaw
  J Biol Inorg Chem 2018 Jun 1. doi: 10.1007/s00775-018-1569-1.  

• The aquatic animals‘ transcriptome resource for comparative functional analysis.

  C.H. Chou, H.Y. Huang, W.C. Huang, S.D. Hsu, C.D. Hsiao, C.Y. Liu, Y.H. Chen, Y.C. Liu, W.Y. Huang, M.L. Lee, Y.C. Chen, H.D. Huang,
  BMC Genomics. 2018 May 9;19(Suppl 2):103. doi: 10.1186/s12864-018-4463-x.  

• Ouroboros resembling competitive endogenous loop (ORCEL) in circular RNAs revealed through transcriptome sequencing dataset analysis.

  Y.C. Liu, H.C. Hong, C.D. Yang, W.H. Lee, H.T. Huang, H.D. Huang,
  BMC Genomics. 2018 May 9;19(Suppl 2):171. doi: 10.1186/s12864-018-4456-9.  

• Integrated microRNA and mRNA expression profile analysis of tumor-associated macrophages after exposure to single-dose irradiation.

  W.H. Kung, C.L. Lee, C.D. Yang, C.F. Yu, M.Y. Chiew, F.H. Chen, H.D. Huang,
  Comput Biol Chem. 2018 Jun;74:368-378. doi: 10.1016/j.compbiolchem.2018.03.016. Epub 2018 Mar 13.  

• AMPK Phosphorylation of ACE2 in Endothelium Mitigates Pulmonary Hypertension.

  J. Zhang, J. Dong, M. Martin, M. He, B. Gongol, T.L. Marin, L. Chen, X. Shi, Y. Yin, F. Shang, Y. Wu, H.Y. Huang, J. Zhang, Y. Zhang, J. Kang, E.A. Moya, H.D. Huang, F.L. Powell, Z. Chen, P.A. Thistlethwaite, Z.Y. Yuan, J.Y. Shyy,
  Am J Respir Crit Care Med. 2018 Mar 23. doi: 10.1164/rccm.201712-2570OC. [Epub ahead of print]  

• A Three-MicroRNA Signature as a Potential Biomarker for the Early Detection of Oral Cancer.

  Y.A. Chang, S.L. Weng, S.F. Yang*, C.H. Chou, W.C. Huang, S.J. Tu, T.H. Chang, C.N. Huang, Y.J. Jong, H.D. Huang*
  INT J MOL SCI. 2018 Mar 7;19(3). pii: E758. doi: 10.3390/ijms19030758.  

• Biclustering of transcriptome sequencing data reveals human tissue-specific circular RNAs

  Y.C. Liu, Y.J. Chiu, C.H. Sun, C.C. Liu, H.D. Huang*
  BMC Genomics. 2018 Jan 19;19(Suppl 1)  

• Compositional and functional variations of oral microbiota associated with the mutational changes in oral cancer

  S.F. Yang, H.D. Huang, W.L. Fan, Y.J. Jong, M.K. Chen, C.N. Huang, C.Y. Chuang, Y.L. Kuo, W.H. Chung, S.C. Su*
  Oral Oncology. 2018 Feb;77:1-8  

• PredCRP: predicting and analysing the regulatory roles of CRP from its binding sites in Escherichia coli

  M.J. Tsai, J.R. Wang, C.D. Yang, K.C. Kao, W.L. Huang, C.P. Tseng, H.D. Huang, S.Y. Ho*
  Scientific Reports. 2018 Jan 17;8(1):951  

• miRTarBase update 2018: a resource for experimentally validated microRNA-target interactions.

  C.H. Chou, S Shrestha, C.D. Yang, N.W. Chang, Y.L. Lin, K.W. Liao, W.C. Huang, T.H. Sun, S.J. Tu, W.H. Lee, M.Y. Chiew, C.S. Tai, T.Y. Wei, T.R. Tsai,H.T. Huang, C.Y. Wang, H.Y. Wu, S.Y. Ho, P.R. Chen, C.H. Chuang, P.J. Hsieh, Y.S. Wu, W.L. Chen, M.J.Li, Y.C. Wu, X.Y. Huang, F.L. Ng,H.D. Huang*
  Nucleic Acids Research. 2018 Jan 4;46(D1):D296-D302.