Integrative System Biology Laboratory

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Publications »  2017

• Integrated MicroRNA-mRNA Analysis Reveals miR-204 Inhibits Cell Proliferation in Gastric Cancer by Targeting CKS1B, CXCL1 and GPRC5A.

  Shrestha S, C.D. Yang, H.C. Hong, C.H. Chou, C.S. Tai, M.Y. Chiew, W.L. Chen, S.L. Weng, C.C. Chen, Y.A. Chang, M.L. Lee, W.Y. Huang, S.D. Hsu, Y.C. Chen, H.D. Huang*
  Int J Oncol. 2017 Dec 28;19(1)  

• Bacterial alterations in salivary microbiota and their association in oral cancer.

  W.H. Lee, H.M. Chen, S.F. Yang, C. Liang, C.Y. Peng, F.M. Lin, L.L., Tsai, B.C. Wu,C.H. Hsin, C.Y. Chuang, T. Yang, T.L. Yang, S.Y. Ho, W.L. Chen, K.C. Ueng, H.D. Huang*, C.N. Huang*, Y.J. Jong*
  Scientific Reports.2017 Nov 28;7(1):16540. doi: 10.1038/s41598-017-16418-x.  

• Krüppel-Like Factor 4 Regulation of Cholesterol-25-Hydroxylase and Liver X Receptor Mitigates Atherosclerosis Susceptibility.

  Li Z, Martin M, Zhang J, Huang HY, Bai L, Zhang J, Kang J, He M, Li J, Maurya MR, Gupta S, Zhou G, Sangwung P, Xu YJ, Lei T, Huang HD, Jain M, Jain MK, Subramaniam S, Shyy JY.
  Circulation.2017 Oct 3;136(14):1315-1330  

• α-ketoglutarate orchestrates macrophage activation through metabolic and epigenetic reprogramming.

  P.S. Llu, H. Wang, X. Li, T. Chao, T. Teav, S. Christen, G. Di Conza, W.C. Cheng, C.H. Chou, M. Vavakova, C. Muret, K. Debackere, M. Mazzone, H.D. Huang, S.M. Fendt, J. Ivanisevic, P.C. Ho*
  Nat Immunol. 2017 Sep;18(9):985-994  

• MicroRNA-92a Mediates Endothelial Dysfunction in CKD.

  F. Shang, S.C. Wang, C.Y. Hsu, Y. Miao, M. Martin, M. Y. Yin, C.C. Wu, Y.T. Wang, G. Wu, S. Chien, H.D. Huang, D.C. Tarng, Y.T. Shiu, A.K. Cheung, P.H. Huang, Z. Chen, J.Y. Shyy*
  J Am Soc Nephrol. 2017 Jul 10. pii: ASN.2016111215  

• Evaluation of whole exome sequencing by targeted gene sequencing and Sanger sequencing

  Y.S. Chang, H.D. Huang, K.T. Yeh, J.G. Chang*
  Clin Chim Acta. 2017 Aug;471:222-232  

• DNA Methyltransferases Modulate Hepatogenic Lineage Plasticity of Mesenchymal Stromal Cells

  C.W. Lee, W.C. Huang, H.D. Huang, Y.H. Huang, J.H. Ho, M.H. Yang, V.W. Yang, O.K. Lee*
  Stem Cell Reports. 2017 Jul 11;9(1):247-263  

• Gene expression profiling of tumor-associated macrophages after exposure to single-dose irradiation

  W.H. Kung, C.F. Yu, A.C. Lee, C.D. Yang, Y.C. Liu, F.H. Chen*, H.D. Huang*
  Comput Biol Chem. 2017 Aug;69:138-146  

• Plant miRNAs found in human circulating system provide evidences of cross kingdom RNAi

  Y.C. Liu, W.L. Chen, W.H. Kung, H.D. Huang*
  BMC Genomics. 2017 Mar 14;18  

• Identification of novel mutations in endometrial cancer patients by whole-exome sequencing

  Y.S. Chang, H.D. Huang, K.T. Yeh, J.G. Chang*
  Int J Oncol. 2017 May;50(5):1778-1784.  

• Diversity and enterotype in gut bacterial community of adults in Taiwan

  C. Liang, H.C. Tseng, H.M. Chen, W.C. Wang, C.M. Chiu, J.Y. Chang, K.Y. Lu, S.L. Weng, T.H. Chang, C.H.Chang, C.T. Weng, H.M. Wang, H.D. Huang*
  BMC Genomics. 2017 Jan 25;18(Suppl 1):932.   

• Haptoglobin expression correlates with tumor differentiation and five-year overall survival rate in hepatocellular carcinoma.

  C.S. Tai, Y.R. Lin, T.H. Teng, P.Y. Lin, S.J. Tu, C.H. Chou, Y.R. Huang, W.C. Huang, S.L. Weng, H.D. Huang, Y.L. Chen, W.L. Chen
  PLoS One. 2017 Feb 3;12(2):e0171269.  

• Characterization of the Drug Resistance Profiles of Patients Infected with CRF07_BC Using Phenotypic Assay and Ultra-Deep Pyrosequencing

  S.W. Huang, W.Y. Li, W.H. Wang, Y.T. Lin, C.H. Chou, M. Chen, H.D. Huang, Y.H. Chen, P.L. Lu, S.F. Wang, S. Oka, Y.A.Chen*
  PLoS One. 2017 Jan 20;12(1):e0170420.  

• Honeysuckle aqueous extract and induced let-7a suppress dengue virus type 2 replication and pathogenesis

  Y.R. Lee, S.F. Yeh, X.M. Ruan, H. Zhang, S.D. Hsu, H.D. Huang, C.C. Hsieh, Y.S. Lin, T.M. Yeh, H.S. Liu*, D.D. Gan*
  J Ethnopharmacol. 2017 Feb 23;198:109-121